Publications

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1. Carrell DT, Emery BR, Hammoud S: Altered protamine expression and diminished spermatogenesis: What is the link? Hum. Reprod. Update 13(3): 313-327, 2007. PM17208950

2. Carrell DT, Emery BR, Hammoud S: The aetiology of sperm protamine abnormalities and their potential impact on the sperm epigenome. Int. J. Androl. 31(6): 537-545, 2008. PM18298569

3. Hammoud S, Emery BR, Aoki VW, Carrell DT: Identification of genetic variation in the 5′ and 3′ non- coding regions of the protamine genes in patients with protamine deregulation. Arch. Androl. 53(5): 267- 274, 2008. PM18309899

4. Hammoud S, Liu L, Carrell DT: Protamine ratio and the level of histone retention in sperm selected from a density gradient preparation. Andrologia 41(2): 88-94, 2009. PM19260844

5. Hammoud S, Emery BR, Dunn D, Weiss RB, Carrell DT: Sequence alterations in the YBX2 gene are associated with male factor infertility. Fertil. Steril. 91(4): 1090-1095, 2009. PM18339382

6. Hammoud SS, Nix DA, Zhang H, Purwar J, Carrell DT, Cairns BR: Distinctive chromatin in human sperm packages genes for embryo development. Nature 460(7254): 473-478, 2009. PM19525931

7. Carrell DT, Hammoud SS: The human sperm epigenome and its potential role in embryonic development. Mol. Hum. Reprod. 16(1): 37-47, 2009. PM19906823

8. Hammoud SS, Purwar J, Pflueger C, Cairns BR, Carrell DT: Alterations in sperm DNA methylation patterns at imprinted loci in two classes of infertility. Fertil. Steril. 94(5): 1728-1733, 2010. PM19880108

9. Milroy C, Liu L, Hammoud S, Hammoud A, Peterson CM, Carrell DT: Differential methylation of pluripotency gene promoters in in vitro matured and vitrified, in vivo-matured mouse oocytes. Fertil. Steril. 95(6): 2094-2099, 2011. PM21457962

10. Hammoud SS, Nix DA, Hammoud AO, Gibson M, Cairns BR, Carrell DT: Genome-wide analysis identifies changes in histone retention and epigenetic modifications at developmental and imprinted gene loci in the sperm of infertile men Hum. Reprod. 26(9): 2558-2569, 2011. PM21685136

11. Wu SF, Zhang H, Hammoud SS, Potok M, Nix DA, Jones DA, Cairns BR: DNA methylation profiling in zebrafish. Methods Cell Biol. 104: 327-339, 2011. PM21924171

12. Swierczek SI, Piterkova L, Jelinek J, Agarwal N, Hammoud S, Wilson A, Hickman K, Parker CJ, Cairns BR, Cairns B, Prchal JT: Methylation of AR locus does not always reflect X chromosome inactivation state. Blood 119(13): e100-e109, 2012. PM22286197

13. Hammoud SS, Cairns BR, Carrell DT: Analysis of gene-specific and genome-wide sperm DNA methylation Methods Mol. Biol. 927: 451-458, 2013. PM22992936

14. Hammoud SS, Cairns BR, Jones DA: Epigenetic regulation of colon cancer and intestinal stem cells Curr. Opin. Cell Biol. 25(2): 177-183, 2013. PM23402869

15. Hong C, Clement NL, Clement S, Hammoud SS, Carrell DT, Cairns BR, Snell Q, Clement MJ, Johnson WE: Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. BMC Bioinformatics 14(1): 2013. PM24261665

16. Hammoud SS, Low DH, Yi C, Carrell DT, Guccione E, Cairns BR: Chromatin and transcription transitions of mammalian adult germline stem cells and spermatogenesis. Cell Stem Cell 15(2): 239-253, 2014. PM24835570

17. Hammoud SS, Low DH, Yi C, Lee CL, Oatley JM, Payne CJ, Carrell DT, Guccione E, Cairns BR: Transcription and imprinting dynamics in developing postnatal male germline stem cells. Genes Dev 29 (21): 2312-24, 2015. PM26545815/PMC4647563

18. Borges BC, Garcia-Galiano D, da Silveira Cruz-Machado S, Han X, Gavrilina GB, Saunders TL, Auchus RJ, Hammoud SS, Smith GD, Elias CF: Obesity-Induced Infertility in Male Mice Is Associated With Disruption of Crisp4 Expression and Sperm Fertilization Capacity. Endocrinology 158(9): 2930-2943, 2017. PM28911169

19. Dehghanizadeh S, Khoddami V, Mosbruger TL, Hammoud SS, Edes K, Berry TS, Done M, Samowitz WS, DiSario JA, Luba DG, Burt RW, Jones DA: Active BRAF-V600E is the key player in generation of a sessile serrated polyp-specific DNA methylation profile. PLoS One 13(3): e0192499, 2018. PM29590112 /PMC5873940

20. Green CD, Ma Q, Manske GL, Shami AN, Zheng X, Marini S, Moritz L, Sultan C, Gurczynski SJ, Moore BB, Tallquist MD, Li JZ, Hammoud SS: A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq. Dev Cell 46(5): 651-667.e10, 2018. PM30146481

21. Sohni A, Tan K, Song HW, Burow D, de Rooij DG, Laurent L, Hsieh TC, Rabah R, Hammoud SS, Vicini E, Wilkinson MF: The Neonatal and Adult Human Testis Defined at the Single-Cell Level. Cell Rep 26(6): 1501-1517.e4, 2019. PM30726734

22. Adrienne Niederriter Shami1,6, Xianing Zheng1,6, Sarah K. Munyoki2,6, Qianyi Ma1, Christopher D. Green1, Meena Sukhwani2, Kyle E. Orwig2, Jun Z. Li1,3, Saher Sue Hammoud1,4,5,7*. Single-cell RNA sequencing of human, macaque, and mouse testes uncovers conserved and divergent features of mammalian spermatogenesis.  Dev Cell. epub. 2020  PMID: 32504559.

23. Yu-chi Shen*, Hailey Larose*, Adrienne Niederriter Shami*, Lindsay Moritz*, Gabriel L. Manske#, Qianyi Ma#, Xianing Zheng, Meena Sukhwani, Michael Czerwinski, Caleb Sultan, Jourdan Clements, Haolin Chen, Jason R. Spence, Kyle E. Orwig, Michelle Tallquist, Jun Z. Li, Saher Sue Hammoud.  Tcf21+ mesenchymal cells contribute to testis somatic cell development, homeostasis, and regeneration. bioRxiv preprint doi: https://doi.org/10.1101/2020.05.02.074518. 

24. Hailey Larose, Travis Kent, Qianyi Ma, Adrienne Niederriter Shami, Nadia Harerimana, Jun Z. Li, Saher Sue Hammoud*, Mary Ann Handel*. Regulation of meiotic progression by Sertoli-cell androgen signaling. bioRxiv preprint doi:https://doi.org/10.1101/2020.05.26.117093.

25. Kelly M. Bakulski*, John F. Dou, Robert C. Thompson, Christopher Lee, Lauren Y. Middleton, Bambarendage P. U. Perera, Sean P. Ferris, Tamara R. Jones, Kari Neier, Xiang Zhou, Maureen A. Sartor, Saher S. Hammoud, Dana C. Dolinoy, Justin A. Colacino* .Single cell analysis of the gene expression effects of developmental lead (Pb) exposure on the mouse hippocampus. Toxicol Sci. epub 2020 May 27.